DNA barcoding in native plants of the Labiatae (Lamiaceae) family from Chios Island (Greece) and the adjacent Çeşme‐Karaburun Peninsula (Turkey)
Identifieur interne : 000039 ( Main/Exploration ); précédent : 000038; suivant : 000040DNA barcoding in native plants of the Labiatae (Lamiaceae) family from Chios Island (Greece) and the adjacent Çeşme‐Karaburun Peninsula (Turkey)
Auteurs : Spyros Theodoridis [Grèce] ; Anastasia Stefanaki [Grèce] ; Meltem Tezcan [Turquie] ; Cuneyt Aki [Turquie] ; Stella Kokkini [Grèce] ; Konstantinos E. Vlachonasios [Grèce]Source :
- Molecular Ecology Resources [ 1755-098X ] ; 2012-07.
Descripteurs français
- Wicri :
- topic : écologie.
English descriptors
- KwdEn :
- Acinos, Acinos alpinus, Acinos rotundifolius, Ajuga, Ajuga chamaepitys, Ajuga orientalis, Alpinus, Aristotle university, Ballota acetabulosa, Barcode, Barcode regions, Barcodes, Barcoding, Barcoding markers, Blackwell publishing, Bootstrap, Bootstrap support, Capitatus, Cbol, Cbol plant, Chios, Chios island, Collection location, Coridothymus capitatus, Cretica, Data book, Data sets, Different methods, Doctoral thesis, East aegean islands, Ecology, Edinburgh, Edinburgh university press, Erickson, Essential oils, Fazekas, Flora, Form clusters, Fruticosa, Global strategy, Grey boxes, Harley, Herbarium, Herbarium specimens, Intergenic spacer, Karousou, Kokkini, Kress, Kress erickson, Labiatae, Labiatae family, Labiatae species, Lahaye, Lamiaceae, Lamium, Lamium amplexicaule, Lamium moschatum, Land plants, Lavandula stoechas, Marrubium vulgare, Matk, Matk rbcl, Matk rbcl matk rbcl matk rbcl matk rbcl, Matk region, Mentha, Mentha longifolia, Mentha pulegium, Mentha spicata, Mentha suaveolens, Micromeria, Molecular ecology resources, Molecular phylogenetics, Multiregion, Multiregion barcodes, National academy, Native plants, Nepeta italica, Newmaster ragupathy, Nucleotide substitution, Origanum, Origanum onites, Origanum sipyleum, Phlomis, Phlomis cretica, Phlomis fruticosa, Plant conservation, Plant species, Plastid, Posterior probability, Previous studies, Primer, Primer pair, Primer pairs, Pulegium, Rbcl, Rbcl region, Recovery success, Regional approach, Royal botanic gardens, Salvia, Salvia fruticosa, Salvia pomifera, Salvia tomentosa, Salvia verbenaca, Salvia virgata, Salvia viridis, Sequencing, Sequencing success, Sideritis, Sideritis sipylea, Single region, Sipyleus, Species names, Specimen accession, Spicata, Stachys cretica, Stefanaki, Suaveolens, Systematic biology, Taxon, Taxonomic, Taxonomic revision, Teucrium, Teucrium brevifolium, Teucrium divaricatum, Teucrium montanum, Teucrium polium, Teucrium scordium, Thessaloniki, Thymbra, Thymbra spicata, Thymus, Thymus sipyleus, Thymus zygioides, Upgma, Virgata, Viridis, Ziziphora taurica.
- Teeft :
- Acinos, Acinos alpinus, Acinos rotundifolius, Ajuga, Ajuga chamaepitys, Ajuga orientalis, Alpinus, Aristotle university, Ballota acetabulosa, Barcode, Barcode regions, Barcodes, Barcoding, Barcoding markers, Blackwell publishing, Bootstrap, Bootstrap support, Capitatus, Cbol, Cbol plant, Chios, Chios island, Collection location, Coridothymus capitatus, Cretica, Data book, Data sets, Different methods, Doctoral thesis, East aegean islands, Ecology, Edinburgh, Edinburgh university press, Erickson, Essential oils, Fazekas, Flora, Form clusters, Fruticosa, Global strategy, Grey boxes, Harley, Herbarium, Herbarium specimens, Intergenic spacer, Karousou, Kokkini, Kress, Kress erickson, Labiatae, Labiatae family, Labiatae species, Lahaye, Lamiaceae, Lamium, Lamium amplexicaule, Lamium moschatum, Land plants, Lavandula stoechas, Marrubium vulgare, Matk, Matk rbcl, Matk rbcl matk rbcl matk rbcl matk rbcl, Matk region, Mentha, Mentha longifolia, Mentha pulegium, Mentha spicata, Mentha suaveolens, Micromeria, Molecular ecology resources, Molecular phylogenetics, Multiregion, Multiregion barcodes, National academy, Native plants, Nepeta italica, Newmaster ragupathy, Nucleotide substitution, Origanum, Origanum onites, Origanum sipyleum, Phlomis, Phlomis cretica, Phlomis fruticosa, Plant conservation, Plant species, Plastid, Posterior probability, Previous studies, Primer, Primer pair, Primer pairs, Pulegium, Rbcl, Rbcl region, Recovery success, Regional approach, Royal botanic gardens, Salvia, Salvia fruticosa, Salvia pomifera, Salvia tomentosa, Salvia verbenaca, Salvia virgata, Salvia viridis, Sequencing, Sequencing success, Sideritis, Sideritis sipylea, Single region, Sipyleus, Species names, Specimen accession, Spicata, Stachys cretica, Stefanaki, Suaveolens, Systematic biology, Taxon, Taxonomic, Taxonomic revision, Teucrium, Teucrium brevifolium, Teucrium divaricatum, Teucrium montanum, Teucrium polium, Teucrium scordium, Thessaloniki, Thymbra, Thymbra spicata, Thymus, Thymus sipyleus, Thymus zygioides, Upgma, Virgata, Viridis, Ziziphora taurica.
Abstract
The plant family Labiatae (Lamiaceae) is known for its fine medicinal and aromatic herbs like lavender, mint, oregano, sage and thyme and is a rich source of essential oils for the food, pharmaceutical and cosmetic industry. Besides its great economic importance, the Labiatae family contributes significantly to the endemic flora of Greece and Turkey. Owing to its economic and biological significance and to the difficult identification based on morphological characters of several of its taxa, the Labiatae family is an ideal case for developing DNA barcodes. The purpose of this study is to evaluate the utility of DNA barcoding on a local scale in discriminating Labiatae species in Chios Island (Greece) and the adjacent Çeşme‐Karaburun Peninsula (Turkey). We chose three cpDNA regions (matK, rbcL, trnH‐psbA) that were proposed by previous studies and tested them either as single region or as multiregion barcodes based on the criteria determined by Consortium for the Barcode of Life (CBOL). Our results show that matK and trnH‐psbA taken as useful in discriminating species of the Labiatae, for the species we examined, as any multiregion combination. matK and trnH‐psbA could serve as single‐region barcodes for Labiatae species contributing to the conservation and the trade control of valuable plant resources.
Url:
DOI: 10.1111/j.1755-0998.2012.03129.x
Affiliations:
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Vlachonasios</name><affiliation wicri:level="1"><country xml:lang="fr">Grèce</country><wicri:regionArea>Postgraduate Studies Program, Conservation of Biodiversity and Sustainable Exploitation of Native Plants (BNP), School of Biology, Faculty of Sciences, Aristotle University of Thessaloniki, 54124 Thessaloniki</wicri:regionArea><wicri:noRegion>54124 Thessaloniki</wicri:noRegion></affiliation><affiliation wicri:level="1"><country xml:lang="fr">Grèce</country><wicri:regionArea>Department of Botany, School of Biology, Faculty of Sciences, Aristotle University of Thessaloniki, 54124 Thessaloniki</wicri:regionArea><wicri:noRegion>54124 Thessaloniki</wicri:noRegion></affiliation></author></analytic><monogr></monogr><series><title level="j" type="main">Molecular Ecology Resources</title><title level="j" type="alt">MOLECULAR ECOLOGY RESOURCES</title><idno type="ISSN">1755-098X</idno><idno type="eISSN">1755-0998</idno><imprint><biblScope unit="vol">12</biblScope><biblScope unit="issue">4</biblScope><biblScope unit="page" from="620">620</biblScope><biblScope unit="page" to="633">633</biblScope><biblScope unit="page-count">14</biblScope><publisher>Blackwell Publishing Ltd</publisher><pubPlace>Oxford, UK</pubPlace><date type="published" when="2012-07">2012-07</date></imprint><idno type="ISSN">1755-098X</idno></series></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">1755-098X</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Acinos</term><term>Acinos alpinus</term><term>Acinos rotundifolius</term><term>Ajuga</term><term>Ajuga chamaepitys</term><term>Ajuga orientalis</term><term>Alpinus</term><term>Aristotle university</term><term>Ballota acetabulosa</term><term>Barcode</term><term>Barcode regions</term><term>Barcodes</term><term>Barcoding</term><term>Barcoding markers</term><term>Blackwell publishing</term><term>Bootstrap</term><term>Bootstrap support</term><term>Capitatus</term><term>Cbol</term><term>Cbol plant</term><term>Chios</term><term>Chios island</term><term>Collection location</term><term>Coridothymus capitatus</term><term>Cretica</term><term>Data book</term><term>Data sets</term><term>Different methods</term><term>Doctoral thesis</term><term>East aegean islands</term><term>Ecology</term><term>Edinburgh</term><term>Edinburgh university press</term><term>Erickson</term><term>Essential oils</term><term>Fazekas</term><term>Flora</term><term>Form clusters</term><term>Fruticosa</term><term>Global strategy</term><term>Grey boxes</term><term>Harley</term><term>Herbarium</term><term>Herbarium specimens</term><term>Intergenic spacer</term><term>Karousou</term><term>Kokkini</term><term>Kress</term><term>Kress erickson</term><term>Labiatae</term><term>Labiatae family</term><term>Labiatae species</term><term>Lahaye</term><term>Lamiaceae</term><term>Lamium</term><term>Lamium amplexicaule</term><term>Lamium moschatum</term><term>Land plants</term><term>Lavandula stoechas</term><term>Marrubium vulgare</term><term>Matk</term><term>Matk rbcl</term><term>Matk rbcl matk rbcl matk rbcl matk rbcl</term><term>Matk region</term><term>Mentha</term><term>Mentha longifolia</term><term>Mentha pulegium</term><term>Mentha spicata</term><term>Mentha suaveolens</term><term>Micromeria</term><term>Molecular ecology resources</term><term>Molecular phylogenetics</term><term>Multiregion</term><term>Multiregion barcodes</term><term>National academy</term><term>Native plants</term><term>Nepeta italica</term><term>Newmaster ragupathy</term><term>Nucleotide substitution</term><term>Origanum</term><term>Origanum onites</term><term>Origanum sipyleum</term><term>Phlomis</term><term>Phlomis cretica</term><term>Phlomis fruticosa</term><term>Plant conservation</term><term>Plant species</term><term>Plastid</term><term>Posterior probability</term><term>Previous studies</term><term>Primer</term><term>Primer pair</term><term>Primer pairs</term><term>Pulegium</term><term>Rbcl</term><term>Rbcl region</term><term>Recovery success</term><term>Regional approach</term><term>Royal botanic gardens</term><term>Salvia</term><term>Salvia fruticosa</term><term>Salvia pomifera</term><term>Salvia tomentosa</term><term>Salvia verbenaca</term><term>Salvia virgata</term><term>Salvia viridis</term><term>Sequencing</term><term>Sequencing success</term><term>Sideritis</term><term>Sideritis sipylea</term><term>Single region</term><term>Sipyleus</term><term>Species names</term><term>Specimen accession</term><term>Spicata</term><term>Stachys cretica</term><term>Stefanaki</term><term>Suaveolens</term><term>Systematic biology</term><term>Taxon</term><term>Taxonomic</term><term>Taxonomic revision</term><term>Teucrium</term><term>Teucrium brevifolium</term><term>Teucrium divaricatum</term><term>Teucrium montanum</term><term>Teucrium polium</term><term>Teucrium scordium</term><term>Thessaloniki</term><term>Thymbra</term><term>Thymbra spicata</term><term>Thymus</term><term>Thymus sipyleus</term><term>Thymus zygioides</term><term>Upgma</term><term>Virgata</term><term>Viridis</term><term>Ziziphora taurica</term></keywords><keywords scheme="Teeft" xml:lang="en"><term>Acinos</term><term>Acinos alpinus</term><term>Acinos rotundifolius</term><term>Ajuga</term><term>Ajuga chamaepitys</term><term>Ajuga orientalis</term><term>Alpinus</term><term>Aristotle university</term><term>Ballota acetabulosa</term><term>Barcode</term><term>Barcode regions</term><term>Barcodes</term><term>Barcoding</term><term>Barcoding markers</term><term>Blackwell publishing</term><term>Bootstrap</term><term>Bootstrap support</term><term>Capitatus</term><term>Cbol</term><term>Cbol plant</term><term>Chios</term><term>Chios island</term><term>Collection location</term><term>Coridothymus capitatus</term><term>Cretica</term><term>Data book</term><term>Data sets</term><term>Different methods</term><term>Doctoral thesis</term><term>East aegean islands</term><term>Ecology</term><term>Edinburgh</term><term>Edinburgh university press</term><term>Erickson</term><term>Essential oils</term><term>Fazekas</term><term>Flora</term><term>Form clusters</term><term>Fruticosa</term><term>Global strategy</term><term>Grey boxes</term><term>Harley</term><term>Herbarium</term><term>Herbarium specimens</term><term>Intergenic spacer</term><term>Karousou</term><term>Kokkini</term><term>Kress</term><term>Kress erickson</term><term>Labiatae</term><term>Labiatae family</term><term>Labiatae species</term><term>Lahaye</term><term>Lamiaceae</term><term>Lamium</term><term>Lamium amplexicaule</term><term>Lamium moschatum</term><term>Land plants</term><term>Lavandula stoechas</term><term>Marrubium vulgare</term><term>Matk</term><term>Matk rbcl</term><term>Matk rbcl matk rbcl matk rbcl matk rbcl</term><term>Matk region</term><term>Mentha</term><term>Mentha longifolia</term><term>Mentha pulegium</term><term>Mentha spicata</term><term>Mentha suaveolens</term><term>Micromeria</term><term>Molecular ecology resources</term><term>Molecular phylogenetics</term><term>Multiregion</term><term>Multiregion barcodes</term><term>National academy</term><term>Native plants</term><term>Nepeta italica</term><term>Newmaster ragupathy</term><term>Nucleotide substitution</term><term>Origanum</term><term>Origanum onites</term><term>Origanum sipyleum</term><term>Phlomis</term><term>Phlomis cretica</term><term>Phlomis fruticosa</term><term>Plant conservation</term><term>Plant species</term><term>Plastid</term><term>Posterior probability</term><term>Previous studies</term><term>Primer</term><term>Primer pair</term><term>Primer pairs</term><term>Pulegium</term><term>Rbcl</term><term>Rbcl region</term><term>Recovery success</term><term>Regional approach</term><term>Royal botanic gardens</term><term>Salvia</term><term>Salvia fruticosa</term><term>Salvia pomifera</term><term>Salvia tomentosa</term><term>Salvia verbenaca</term><term>Salvia virgata</term><term>Salvia viridis</term><term>Sequencing</term><term>Sequencing success</term><term>Sideritis</term><term>Sideritis sipylea</term><term>Single region</term><term>Sipyleus</term><term>Species names</term><term>Specimen accession</term><term>Spicata</term><term>Stachys cretica</term><term>Stefanaki</term><term>Suaveolens</term><term>Systematic biology</term><term>Taxon</term><term>Taxonomic</term><term>Taxonomic revision</term><term>Teucrium</term><term>Teucrium brevifolium</term><term>Teucrium divaricatum</term><term>Teucrium montanum</term><term>Teucrium polium</term><term>Teucrium scordium</term><term>Thessaloniki</term><term>Thymbra</term><term>Thymbra spicata</term><term>Thymus</term><term>Thymus sipyleus</term><term>Thymus zygioides</term><term>Upgma</term><term>Virgata</term><term>Viridis</term><term>Ziziphora taurica</term></keywords><keywords scheme="Wicri" type="topic" xml:lang="fr"><term>écologie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The plant family Labiatae (Lamiaceae) is known for its fine medicinal and aromatic herbs like lavender, mint, oregano, sage and thyme and is a rich source of essential oils for the food, pharmaceutical and cosmetic industry. Besides its great economic importance, the Labiatae family contributes significantly to the endemic flora of Greece and Turkey. Owing to its economic and biological significance and to the difficult identification based on morphological characters of several of its taxa, the Labiatae family is an ideal case for developing DNA barcodes. The purpose of this study is to evaluate the utility of DNA barcoding on a local scale in discriminating Labiatae species in Chios Island (Greece) and the adjacent Çeşme‐Karaburun Peninsula (Turkey). We chose three cpDNA regions (matK, rbcL, trnH‐psbA) that were proposed by previous studies and tested them either as single region or as multiregion barcodes based on the criteria determined by Consortium for the Barcode of Life (CBOL). Our results show that matK and trnH‐psbA taken as useful in discriminating species of the Labiatae, for the species we examined, as any multiregion combination. matK and trnH‐psbA could serve as single‐region barcodes for Labiatae species contributing to the conservation and the trade control of valuable plant resources.</div></front></TEI><affiliations><list><country><li>Grèce</li><li>Turquie</li></country></list><tree><country name="Grèce"><noRegion><name sortKey="Theodoridis, Spyros" sort="Theodoridis, Spyros" uniqKey="Theodoridis S" first="Spyros" last="Theodoridis">Spyros Theodoridis</name></noRegion><name sortKey="Kokkini, Stella" sort="Kokkini, Stella" uniqKey="Kokkini S" first="Stella" last="Kokkini">Stella Kokkini</name><name sortKey="Kokkini, Stella" sort="Kokkini, Stella" uniqKey="Kokkini S" first="Stella" last="Kokkini">Stella Kokkini</name><name sortKey="Stefanaki, Anastasia" sort="Stefanaki, Anastasia" uniqKey="Stefanaki A" first="Anastasia" last="Stefanaki">Anastasia Stefanaki</name><name sortKey="Theodoridis, Spyros" sort="Theodoridis, Spyros" uniqKey="Theodoridis S" first="Spyros" last="Theodoridis">Spyros Theodoridis</name><name sortKey="Vlachonasios, Konstantinos E" sort="Vlachonasios, Konstantinos E" uniqKey="Vlachonasios K" first="Konstantinos E." last="Vlachonasios">Konstantinos E. Vlachonasios</name><name sortKey="Vlachonasios, Konstantinos E" sort="Vlachonasios, Konstantinos E" uniqKey="Vlachonasios K" first="Konstantinos E." last="Vlachonasios">Konstantinos E. Vlachonasios</name></country><country name="Turquie"><noRegion><name sortKey="Tezcan, Meltem" sort="Tezcan, Meltem" uniqKey="Tezcan M" first="Meltem" last="Tezcan">Meltem Tezcan</name></noRegion><name sortKey="Aki, Cuneyt" sort="Aki, Cuneyt" uniqKey="Aki C" first="Cuneyt" last="Aki">Cuneyt Aki</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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